Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs80280152 | chr5:175762612 | AG/A | 0.000237 | 479 | 15.5 | 16.3 | 20.77 | KM Plot |
| THCA | rs80281993 | chr9:95843618 | A/G | 2.05E-6 | 487 | 15.77 | 18.43 | 16.57 | KM Plot |
| THCA | rs80297768 | chr4:1177473 | T/C | 6.76E-9 | 484 | 16.13 | 14.9 | 32.1 | KM Plot |
| THCA | rs8030051 | chr15:69702705 | C/T | 0.000258 | 490 | 15.68 | 16.97 | 17.77 | KM Plot |
| THCA | rs8030306 | chr15:41261821 | T/A | 0.000168 | 473 | 15.13 | 16.33 | 16.83 | KM Plot |
| THCA | rs80312073 | chr10:11803391 | G/A | 3.64E-5 | 485 | 16.13 | 14.43 | 12.7 | KM Plot |
| THCA | rs80322925 | chr7:16459089 | C/T | 1.53E-9 | 483 | 15 | 17.7 | 19.87 | KM Plot |
| THCA | rs80327774 | chr10:104656671 | T/C | 5.2E-9 | 489 | 15.17 | 17.73 | 32.1 | KM Plot |
| THCA | rs80343107 | chr4:1152336 | C/T | 7.51E-9 | 484 | 16.2 | 14.92 | 32.1 | KM Plot |
| THCA | rs80348658 | chr3:96783750 | G/A | 2.54E-10 | 488 | 15.83 | 15.17 | 24.65 | KM Plot |
| THCA | rs8036602 | chr15:41543059 | C/T | 0.000214 | 484 | 15.15 | 15.9 | 17.63 | KM Plot |
| THCA | rs8036790 | chr15:54233365 | G/A | 1.11E-16 | 490 | 11 | 17.83 | 15.65 | KM Plot |
| THCA | rs8037837 | chr15:41412475 | G/A | 0.000172 | 478 | 14.9 | 16.07 | 17.03 | KM Plot |
| THCA | rs8041401 | chr15:90958545 | A/G | 0.000255 | 487 | 15.65 | 16.07 | 19.02 | KM Plot |
| THCA | rs8042088 | chr15:41337487 | C/T | 0.000135 | 490 | 16.67 | 16.37 | 15.02 | KM Plot |